Sakura, Shio

Ruri, Hozuki

"Rapunzel," by Ruri Hozuki and Sakura Shio, is a yuri version of the fairy tale Rapunzel. It's an illustrated story rather than a manga. 

(Source: Lililicious)

Rapunzel

Jacqueline was a girl who had to survive in the abandoned lands on the borders of three nations. Her entire world consisted of only one person: her younger brother. But the moment he awakened as a Special Beastman, Jacqueline was forced to watch as the state took him away under the guise of protection.

Having lost everything, she is then burdened with yet another task by Mago, the very person responsible for taking her brother away and who had served as their guardian. She is entrusted with Demi, a young mysterious bird Beastman.

As time passes, Jacqueline and Demi meet once again, as if guided by fate...

(Source: Ridi, translated)

Let Loose

렛 루즈

Kakinouchi, Narumi

Utahime Fight is a collection of three short stories, all of which are about magical, mysteriously attractive girls and they effect they have on the people around them. 

In the first story, a girl and her two friends (one male, one female) are really magical fighters for something - probably love and justice. 

The second story follows two girls who are magically drawn into the plot of a movie, in which a prince strives to save his mother and his land. After being threatened with their lives, they wake up in the library in school. They have a final scene in which they admit that they love each other and story ends.  

The third story is about a magical creature that enchants a young man and brings love into his life. (description from http://okazu.blogspot.com/2005/03/obscure-yuri-manga_23.html)

Utahime Fight!

歌姫Fight!

Yamagishi, Hokuto

Long ago in a distant land, when the heavens ruled the earth, the two of them met by a trick of destiny...

Called the "Wise man of the woods" and given much respect by the villagers, messenger of heaven Olgrius is searching for the origin of the incessant outbreak of storms. Then a villager, speaking riddles of an attacking beast, appears.

The being that Olgrius sees when he returns to the scene of the crime is a savage beast fallen from heaven. But the beast differs from the rumors—he touches Olgrius gently, and protects him from danger...!? 

(Source: Nakama)

Wild Wind

Tsukumo, Mutsumi

A classic yuri manga about a woman who leaves her husband for an old friend from school. There are two stories in this manga--one (Moonlight Flowers) is the main story, and the other (Midnight Flowers) is about the protagonist's friend's past.
Note: this manga contains rape.
(Source: Lililicious)

Also includes another unrelated story.

Moonlight Flowers

月下美人

Sasaki, Kumiko

Fantasy series of short stories that involves animals:

Pet Doctor Atsushi Kirishima meets a cat-guy with tail, cat-ear and injured eye when he is searching for his runaway patient animal. Atsushi can not leave the cat-guy and takes the guy to his animal hospital with him.

Hattori, an apprentice of Atsushi's father, Kenzou finds a dog in the mountains and brings it back in a car. On the way home the dog changes into a girl..

(from B-U)

Suzu no Ne ga Kikoeru

鈴の音がきこえる

Amamiya, Sae

Plica-chan is the bittersweet, realistic story of Plica, a young lesbian looking for love in modern Japan.

The manga, which is written in 4-panel strip style, originally ran in Anise magazine, and now runs in the LOUD News, the newsletter for the LOUD organization. It can also be found online. Plica's comments are often on the nature of sexuality, the relationships between men and women, and between women and women.

The whole strip starts on a low note, as Plica returns from an ex-lover's wedding. But not too long into it, Plica meets Mari, for whom she starts to have feelings pretty soon.

(Source: okazu.blogspot.com)

Plica-chan

プリカちゃん

Kamei, Yogorouta

At the end of the yearly winter, when the Tetsugome Zorainu (or "Celestial Dog") is to chose its bride, all the girls are hidden within their house, afraid that they might be chosen.Yuzu, a young boy living in a household of all girls, is made the black sheep of the family and sent out to do the chores. A chance encounter by the lake with Shuro, a fox spirit, bind Yuzu and Shuro together. (Source: MangaUpdates)

Includes three one-shots: Kotonoha, Neko Yanagi, Shirotakes Bookmark

Kitsune no Tama Yobai

狐の魂呼い

Sugimoto, Ami

The third series in the "Animal X" timeline.

Having burned enough bridges in Japan, Yuuji and Minato have moved their new family to a small dinosaur-crazy town in Canada. If there's any place in the world left for Dinosauroids, surely it must be here: a town revived by the discovery of dinosaur bones, with one of the largest paleontology research centers in the world, and a network of "Conservation Centers" set up to cater to the newly-discovered Dinosauroid community. The rest of the world, None-the-wiser for the incident at the Biodome (which was covered up completely) has pretty much forgotten all about Dinosauroids.

Animal X: Genshi Sairai

Animal X―原始再来

Takashima, Rica

The adventures of college student Rica, as she attends university in Tokyo and visits the gay and lesbian district looking for friendship and love. Rica's story is sweet and funny, realistic and a little wacky with a refreshing lack of self-hatred and doubt, but with no lack of real emotions.

(Source: MU)

Rica tte Kanji!?

Tokyo Love: Rica'tte Kanji!?

リカって感じ!?

Hiiro, Reiichi

Ayase kai almost drowns in the ocean but is saved by a merman. He thought it is all a bizare dream, until the merman shows up again at his company, this time with legs. He claims to be a rich prince and Ayase's new boss but thats not all, his true goal is to make Ayase his mate!
(from B-U)

Wild Fish

ワイルドフィッシュ

Yamato, Nase

A collection of four stories.

1. Magical Travel Boy (ch1-3): an alien boy with magical powers becomes lost while on a school excursion to planet Earth. A local street magician takes him in, but he has a dangerous secret of his own.

2. Love Hospital (ch4): a chatty student is sent to hospital with a broken leg. The patient in the adjacent bed is a student as well, yet refuses to talk to anyone at all.

3. Suki de Warui ka!! [Wrong to Like You!!] (ch5): a shy high school student is a closet otaku who loves drawing manga based on his favorite shows. One day he is horrified when another student happens to see the artwork in his notebook.

4. Foul na Kankei (ch6)

(from B-U)

12 Manga Like The Wolf-Girl and the Seven Kids