Shinohara, Chie

A seemingly ordinary modern day teenager, Yuri, is suddenly whisked away to the Hittite empire in ancient Anatolia, where an ambitious queen wants the girl for a blood sacrifice in order to murder all heirs but her son, thus seizing control of the throne. Luckily, the timely intervention of Prince Kail saves Yuri from the queen's grasp. Kail promises to send Yuri back to her home, but the queen's persistent schemes to kill them both, plus their growing feelings for each other, keep those plans delayed.

(Source: Wikipedia)

Included one-shot:
Volume 28: Orontes Renka

Sora wa Akai Kawa no Hotori

Red River

天は赤い河のほとり

Yuki, Kaori

In this grim and realistic take on classic fairy tales, Prince Ludwig, a female corpse collector, is ordered by his father to find himself a wife more suitable than the women he often brings into the castle. Along with his servant Wilhelm, they travel across the land in search of fair maidens from classic stories in hopes of finding Ludwig a wife.

(Source: Aerandria Scans)

Ludwig Kakumei

ルードヴィッヒ革命

Matsumoto, Natsumi

Momoka Sendou (nicknamed "Dragon Girl") and Ryuga Kou are childhood friends. Momoka is a martial artist, and Ryuga is a Chinese magic master who banishes demons. In order to increase his power, Ryuga calls on the spirit of a dragon to possess him, but the spirit enters Momoka instead. Now the two must unite forces and fight demons together!

(Source: VIZ Media)

Sei♥Dragon Girl

St.♥ Dragon Girl

聖♥ドラゴンガール

Kawachi, Yukari

The story centers on Arisu, who just started high school. Her first day of school, which also happened to fall on her 16th birthday, was rather catastrophic. Arisu was absolutely devastated, and when she came home, she overheard her parents arguing.

She discovered her parents are actually a devil and an angel! Her mother, the angel, explained that she and her father, the devil, fell in love and got married. Arisu is actually half demon and half angel. She cannot control her powers because of this and needs to find her true love. According to her mother, she can track him down by following the red threads tying them together—but Arisu discovers her threads have been cut, and she must find him using the old fashioned way!

(Source: Selene Scans)

Arisu ga Fushigi!

ありすが不思議！

Asagiri, Yuu

MinMin was a witch who lived in the Magic World and studied magic under Balma-sensei. Because of her stupidity, MinMin was cursed into a doll and exiled to the Human World. As a mini-sized doll, MinMin was able to live and do many things just like normal human, but she can't use magic when she was still that form. One day, MinMin was found by a poor college student named Ichiya who lived in a poor apartment. When he kissed MinMin in her doll form, she changed back into a witch girl. However, every time she went to sleep, she will returned back to her form as a doll, and Ichiya will have to kiss her again.

This story was about the adventures of MinMin, Ichiya, Kunitachi (a rich male model with an obsession of the Magic World and crushing on MinMin), Amon (The Prince of the Magic World who was also MinMin's childhood friend), and Shiva (Amon's loyal servant). This manga was highlighted in a light humorous way with charming characters.

(Source: MU)

Minmin!

ミンミン!

Okano, Fumika

A living mineral, a living stone...a living jewelry, Irisite is the rarest and the most valuable jewelry in the world. 

When Feilin landed his plane to fix some of his engine in some small town, he comes across Jura whom is not a mere human. Jura is the Iris, the living stone. Once the Iris grows up, their eyes will becomes a precious stone called Irisite and the merchant who sell Jewelry for their living will take them out while the Iris is still alive. The blind Iris will later being on sales as a slave.

Feilin feels sorry for Jura and wanted to helps the young kid escape from Jura's owner, an evil merchant who is a powerful figure that want to keep Jura for his own benefit.

Iris no Tamago

イリスの卵

Kakinouchi, Narumi

Utahime Fight is a collection of three short stories, all of which are about magical, mysteriously attractive girls and they effect they have on the people around them. 

In the first story, a girl and her two friends (one male, one female) are really magical fighters for something - probably love and justice. 

The second story follows two girls who are magically drawn into the plot of a movie, in which a prince strives to save his mother and his land. After being threatened with their lives, they wake up in the library in school. They have a final scene in which they admit that they love each other and story ends.  

The third story is about a magical creature that enchants a young man and brings love into his life. (description from http://okazu.blogspot.com/2005/03/obscure-yuri-manga_23.html)

Utahime Fight!

歌姫Fight!

Kamiya, Yuu

Two strange encounter with one unfamiliar name confused Rui. First she unconsciously blurted out when she saw a guy in her school, another time is when she heard a woman cries that unfamiliar name out just right when Rui saw the sword her father who is an archeologist shows it to her. With this sword Rui never know that it could transport her back to the old Japan where her father's troop is having a war with another. 

Note: Included in the back of this manga ,there is also an Omake which is a story about Tatsuki and Dule from Maou no Kiza (魔王の刻) This is a prequel story when Tatsuki is still a small kid that doesn't know about his power yet.

Hakuryuu Izayoi den

白龍十六夜伝

Kusunoki, Kei

An adaptation from Japanese's folklore, Momotarou. After fighting with Kintarou from his class about his parents, Momotarou is shocked to find out about his birth origin and decides to run away from home. He gets lost and later makes 3 friends in a wood, a werewolf, were-monkey and were-hawk.

Momotarou Mairu!

桃太郎まいる！

Yamada, Mineko

Chery, tomboyish princess of the Afmet Kingdom is arranged by her parent to get married. The reason is that there's a fire dragon in their country that wakes up every 10 years. It's the country regulation to have a king which must also be a top level magician to rule there, and one of the king's duty is to make the dragon fall asleep every 10 years to save their country. Chery's dad, the king is now injured and so the kingdom need to find their new king, thus the reason for Chery to have to tied the knot with some top level magician. 

Chery doesn't want to get married, and one day before her future husband moves in the palace, she sneaked out to go to the concert instead. After the performance, she secretly sneaked into the band's dressing room and overheard her favorite duo discussing about the fire dragon and is startled, which cause her to get caught. Chery is now being restrained and now have to tack along with her favorite band to the fire dragon's lair.

(Source: MU)

Afmet Oukoku Monogatari

アフメット王国物語

Moriyama, Daisuke

America in the Roaring 20s. On the surface, it's a positive, peaceful time after the violence of the Great War. But lurking in the shadows is a dark element ready to snatch that peace away. Sister Rosette Christopher, an exorcist working as a part of the Magdala Order, has a duty to fight the demons which appear and cause destruction. But along with her companion Chrno, she usually ends up causing more destruction than the demons themselves! On one particular mission, they meet a young girl with a beautiful voice named Azmaria, who is being targeted by her own stepfather. As Rosette and Chrno work to save her, more is revealed about the relationship between them. There is more to these two than meets the eye.

(Source: ADV)

Chrno Crusade

クロノクルセイド

Endou, Minari

A young girl named Rahzel is booted out of her house one day by her father with the instructions to 'see the world.' And so her journey begins, However, she won't be doing it alone...for she befriends a stoic young man named Alzeid seeking revenge for his father's murder.

Alzeid and Rahzel are like oil and water...but even still, they feel strangely drawn to one another. This could be either the result of an underlying attraction—or their shared powers with magic. And so, the two reluctant allies travel from town to town, using their powers to help the helpless, while discovering their own respective places in the world.

(Source: Tokyopop)

12 Manga Like Cluster